FastQCFastQC Report
Wed 13 Sep 2023
stdin:ERR2726509

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR2726509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7964470
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length90-229
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGC479150.6016093977377026Illumina Paired End PCR Primer 2 (100% over 48bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)