FastQCFastQC Report
Tue 12 Sep 2023
stdin:SRR5665017

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5665017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3906301
Total Bases962.6 Mbp
Sequences flagged as poor quality0
Sequence length75-252
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCATACACTGGTGAAGAATTTTCACGGCTTACAAATGTAACTACAGCAT52730.13498703760923697No Hit
CCCATATACTGCGCATATAGATTTTTCATTACAAGTCTCTGATTTTCAGT47680.1220592063950013No Hit
GTCTAATGTATTCAAGCGTGAAATTCCTGATGTACGCAGTGCGTTTCACA42820.10961776883041015No Hit
CTATTAGGTTGTATCTGCATATCTTCACCGCCTTTACATTAGCAGGAAAG42620.10910577551499487No Hit
CCTATAAAGAGATAACAGCAGCAGAGCTTAAAGCACTTGACACTATACCT40840.10454903500779894No Hit
CTTTATAGGTTGGGTCATCAGCAAAGAGAATGTTTAATCTCTCAATGTCT40510.10370424603736374No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)