FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR5665021

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5665021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1378629
Total Bases339.9 Mbp
Sequences flagged as poor quality0
Sequence length152-252
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATGCGGTGCAGCTACCCGCTTCGTGGTTGTGGCGGCGAGCCGCCA15580.11301082452204328No Hit
CCCCTGCACTGCTTCCTTCCAGCTATCCCCGCCCTTCCTGCGTGCGTCTT15020.10894881799236777No Hit
GGCTATAGATGCCCGCAAGTTAATCGGTTAGTCGGTGGTGTTGATAATTC14820.10749810137462652No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)