FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR5665040

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5665040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6693247
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length75-252
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTTCGCAGCGTTCCTCGTACTGCCTCTGTTAAGTTAAAAAGTTCTAC156820.23429585072835352No Hit
GATACGTAAACATTTTGGTGTTAATCTGCCTCAAGCTCTTTCCAACGTTG146100.21827970789065457No Hit
GAGTCAGGTAGCTATTTTATCTCCTATTACTGCTCATTCGGCTCCAATTC127800.1909387177852543No Hit
GTCTCCTTCTGAAATTATTGCTTGGTCTAAAGAGTTGTCAGCTTATGCTG106470.15907077685912382No Hit
CCTTGGTATTGGTACTTCTGCTGTTCAGAATTCACAGAATAGGCAGAATA105900.1582191722492835No Hit
ATATCCGGGAGACCAACCAGATGAATTACAAGATTAATCAGATGAACAAT100500.15015133910342768No Hit
CCACTAAAGAACATTGTGTTGTTATGTGTATTTATCATGCTGTTCCTTTG94470.141142258757222No Hit
GATTATGCAAGGTCGTTGGGATATCGATATCCGATTTGACGAACTTCTTA86610.12939907940047632No Hit
CCTTTCCAGGCTGATTATTCCGGCATAGGTTCTTCCGTTGGTAGCGTTTT82210.122825289429779No Hit
GTTGGACTTACCGTAGGTGATGTTGTTACCCGTTCTGAAGATGGTACGTT68640.10255112354287836No Hit
GCTTAGGCTTGGTCTTCCTCAAGATAATGCCCGAAGCAGGAATATCGAGG68050.10166963806953486No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)