FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR5665108

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5665108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14419184
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length150-252
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGGAATCTGTTATGAATCTTAACGAGCACGATATTACTGTTAAGCA169930.11784994213264774No Hit
GTATAAGAATCCACGATAGAAGAACCTGCGGCTGCGCTAGGCAAGTACGC159920.1109078017174897No Hit
GATATATACCTCCGCGCTTCGCTTGGGGTGTTTTTACAATCATAAAGGAG148240.10280748203227033No Hit
GTATATTAACTGGTCGAATTCTAGCGTATTGAAGATATACAAGAATACTT146850.10184348850808757No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)