FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR5665109

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5665109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1906913
Total Bases474.9 Mbp
Sequences flagged as poor quality0
Sequence length75-252
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATATATACACCCCTTTACATCGGCAAGGTTCCAAGTAGCGGTGGCAGTG27820.14589024250188656No Hit
GTATATATCAATGTACGGGGAGATTTCAGAAATGTGTTGTTGTTGCTGTA24910.13062997630201273No Hit
GTATAGGGATCATGAATATCATGTACGTCAGCGTGACGGAGCGTACACGC19530.10241683810430786No Hit
GTTCCTGATCGAGTCCATCCTGATCAGTGTGACAGGCGGTTTGATAGGTG19170.1005289701208183No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)