FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR5665138

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5665138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9773
Total Bases2.2 Mbp
Sequences flagged as poor quality0
Sequence length75-252
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT410.41952317609741124No Hit
CCTTTTGTGGTCTGACGAAGTGCGCTACGAGACTGTTCGTGGCAAGGACC150.15348408881612607No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)