FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR5665169

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5665169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6934
Total Bases1.6 Mbp
Sequences flagged as poor quality0
Sequence length75-252
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATTCATTCTTGGCCCGCTGGGTTGCATCCCGTCGCCTCCTGCCGTGCT260.37496394577444475No Hit
GGTTTTTTTGGTTTTCGTTGTCTAGATGTCCTTTTCCGAGCCCACGAGAC220.31727718488606865No Hit
GCCCTTTGCTTAATCCTGCTGCTTCCATCTCTCTTGCTTGAGCGCTATAG70.1009518315546582No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)