FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR6179179

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6179179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences303237
Total Bases182.1 Mbp
Sequences flagged as poor quality0
Sequence length599-602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGC3925012.943671121927732No Hit
TACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCC278199.174012406137773No Hit
TACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGAAAGTCTGACCG255438.423444368596181No Hit
TACGGAAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGC246318.122689513482854No Hit
TACGGAAGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCC170885.63519623264971No Hit
TACGGAAGGCAGCAGTAGGGAATCTTCGGCAATGGACGAAAGTCTGACCG147484.863522591240515No Hit
TACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGATGC106783.5213380952852056No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAACC80162.643476884417139No Hit
TACGGAAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGATGC68262.251044562503916No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCCTGAACC65092.1465058683472003No Hit
TACGGAAGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAACC48901.6126000455089582No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAACC44541.4688181191609204No Hit
TACGGAAGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCCTGAACC40691.3418547208948777No Hit
TACGGAAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAACC31891.0516526677153515No Hit
TACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGCAAGCCTGACCC29140.9609645260967494No Hit
TACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGGGAAACCCTGATCC28270.932274095839228No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTCTGAACC25400.8376286534954508No Hit
TACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGCAACCCTGACGC24480.807289347935773No Hit
TACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGGAAGTCTGACCG21830.7198989569214839No Hit
TACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGATGC19870.6552630450769531No Hit
TACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGCAACTCTGACCC18970.6255832896381378No Hit
TACGGAAGGCAGCAGTGGGGAATATTGGGCAATGGGCGCAAGCCTGACCC17350.5721597298482705No Hit
TACGGAAGGCAGCAGTGGGGAATTTTGGACAATGGGGGAAACCCTGATCC17180.5665535538209387No Hit
TACGGAAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTCTGAACC16420.5414906492281615No Hit
TACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGACGG15100.49796034125123256No Hit
TACGGAAGGCAGCAGTGGGGAATATTGCGCAATGGGGGCAACCCTGACGC14830.489056414619588No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGCTAGCCTGAACC13740.4531109330325785No Hit
TACGGAAGGCAGCAGTAGGGAATCTTCGGCAATGGACGGAAGTCTGACCG13530.44618565676352157No Hit
TACGGAAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGATGC12670.4178250015664315No Hit
TACGGAAGGCAGCAGTGGGGAATATTGGGCAATGGAGGCAACTCTGACCC12050.39737894781969224No Hit
TACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGCAAGTCTGACGG11180.36868851756217086No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGATGGCCTGAACC10960.3614334662326827No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCCTGAACC9890.32614753476653574No Hit
TACGGAAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGACGG9100.3000953049924646No Hit
TACGGAAGGCAGCAGTGAGGAATATTGGTCAATGGGCGCTAGCCTGAACC8750.28855317787736984No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGCGAGCCTGAACC8330.2747026253392561No Hit
TACGGGAGGCAGCAGTGGGGAATATTGCACAATGGAGGAAACTCTGATGC8040.265139148586749No Hit
TACGGGAGGCAGCAGTGGGGAATATTGGACAATGGACCAAAAGTCTGATC7980.2631604982241613No Hit
TACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGGGCAACCCTGATCC7620.25128859604863524No Hit
TACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGCAAGCCTGATCC7220.23809759363138402No Hit
TACGGAAGGCAGCAGTGAGGAATATTGGTCAATGGGCGATGGCCTGAACC6630.21864086506593852No Hit
TACGGAAGGCAGCAGTAGGGAATCTTCCGCAATGGACGCAAGTCTGACGG6190.2041307624069622No Hit
TACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGATGC5870.19357796047316125No Hit
TACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGGGGAAACCCTGACCG5700.1879717844458295No Hit
TACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGGAACCCTGACGC5610.18500380890194798No Hit
TACGGGAGGCAGCAGCTCCTGTGGGAAGGAAGGAAACAGGAAATTTACAT5580.18401448372065415No Hit
TACGGAAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCCTGAACC5530.18236560841849775No Hit
TACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCC5440.17939763287461624No Hit
TACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGGAACCCTGACCG5360.17675943239116598No Hit
TACGGAAGGCAGCAGTGGGGAATATTGGACAATGGACCAAAAGTCTGATC5330.17577010720987216No Hit
TACGGAAGGCAGCAGTGGGGAATTTTGGACAATGGGGGCAACCCTGATCC5230.17247235660555935No Hit
TACGGGAGGCAGCAGTAAGGAATATTGGTCAATGGAGGCAACTCTGAACC5060.16686618057822758No Hit
TACGGAAGGCAGCAGTGGGGAATATTGCACAATGGAGGAAACTCTGATGC5050.1665364055177963No Hit
TACGGGAGGCAGCAGTGGGGAATATTGGACAATGGACCGAGAGTCTGATC5030.16587685539693375No Hit
TACGGAAGGCAGCAGTGAGGAATATTGGTCAATGGGCGCGAGCCTGAACC4880.16093022949046457No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCGAGTCTGAACC4770.15730270382572048No Hit
TACGGGAGGCAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTA4630.15268585297968257No Hit
TACGGAAGGCAGCAGTGGGGAATTTTGGACAATGGGCGCAAGCCTGATCC4550.1500476524962323No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGCAGGCCTGAACC4430.14609035177105698No Hit
TACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCCTGACCG4320.1424628261063129No Hit
TACGGAAGGCAGCAGTAGGGAATTTTCGGCAATGGGGGAAACCCTGACCG4170.13751620019984367No Hit
TACGGAAGGCAGCAGCTCCTGTGGGAAGGAAGGAAACAGGAAATTTACAT3910.1289420486286304No Hit
TACGGAAGGCAGCAGTAAGGAATATTGGTCAATGGAGGCAACTCTGAACC3790.12498474790345507No Hit
TACGGGAGGCAGCCGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGC3790.12498474790345507No Hit
TACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGTAAGTCTGAACC3730.12300609754086739No Hit
TACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGAAAGCCTGACGG3630.11970834693655458No Hit
TACGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCA3580.11805947163439819No Hit
TACGGAAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGGAACCCTGACCG3510.11575104621137922No Hit
TACGGAAGGCAGCAGTGGGGAATATTGCGCAATGGGGGGAACCCTGACGC3410.11245329560706642No Hit
TACGGAAGGCAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTA3350.11047464524447874No Hit
TACGGAAGGCAGCAGTGGGGAATATTGGACAATGGACCGAGAGTCTGATC3330.10981509512361619No Hit
TACGGAAGGCAGCAGTGAGGAATATTGGTCAATGGACGCGAGTCTGAACC3280.10816621982145978No Hit
TACGGAAGGCAGCAGTGGGGAATATTGCACAATGGGGGGAACCCTGATGC3240.10684711957973465No Hit
TACGGAAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCC3220.1061875694588721No Hit
TACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGACGG3180.10486846921714699No Hit
TACGGAAGGCAGCAGTGAGGAATATTGGTCAATGGGCGCAGGCCTGAACC3110.10256004379412803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)