FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR6235555

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6235555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences340804
Total Bases21.6 Mbp
Sequences flagged as poor quality0
Sequence length30-200
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC5360.15727514935270712TruSeq Adapter, Index 3 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)