FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR6235637

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6235637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5639043
Total Bases521.4 Mbp
Sequences flagged as poor quality0
Sequence length30-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTCTGCATCTCGTATG487890.8651999993615939TruSeq Adapter, Index 1 (97% over 36bp)
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTCTGCATCTCGTAT92510.16405265928988305TruSeq Adapter, Index 1 (97% over 36bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)