FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR6235740

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6235740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences309990
Total Bases28.7 Mbp
Sequences flagged as poor quality0
Sequence length30-200
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGA16530.5332430078389625No Hit
ATCAGCAGGGAAGAAAATGACGGTACCTGACTAAGAAGCCCCGGCTAACT4810.15516629568695764No Hit
CTGGCATGTTGGAACAATGTAGGTAGGGGA4150.13387528629955806No Hit
AGACCCTGTTGAGCTTGACTCTAGTCCGGCAC3750.1209716442465886No Hit
CTGGCATGTTGGAACAATGTAGGTGAGGGA3640.117423142682022No Hit
GCACGAAAGGCGTAATGATTTGGGCACTGTCTCAACGATACACCCGGTGA3560.1148424142714281No Hit
AAGTACCCGGAGGAAGAGAAAGAAAATTTATCGATTTCCAAAGTAGCGGC3510.11322945901480694No Hit
GCACGAATGGTGTAATGATCTGGACACTGTCTCAACCGTGAGCTCAGTGA3220.10387431852640408No Hit
GCCGTGGGCGCTGGAGAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACC3110.10032581696183748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)