FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR6235902

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6235902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2209251
Total Bases206.4 Mbp
Sequences flagged as poor quality0
Sequence length30-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC106480.48197330226397994TruSeq Adapter, Index 6 (100% over 50bp)
CTGGCATGTTGGAACAATGTAGGTAGGGGA25610.11592164041116196No Hit
CTGGCATGTTGGAACAATGTAGGTGAGGGA25040.11334158047229582No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)