FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR6235903

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6235903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487729
Total Bases53 Mbp
Sequences flagged as poor quality0
Sequence length30-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATG14970.30693274338823406TruSeq Adapter, Index 5 (100% over 49bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC12450.2552647064250844TruSeq Adapter, Index 5 (100% over 50bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)