FastQCFastQC Report
Tue 12 Sep 2023
stdin:SRR16178774

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16178774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3236460
Total Bases970.9 Mbp
Sequences flagged as poor quality0
Sequence length300
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGATTCATCTCGTAT69110.21353577674372617TruSeq Adapter, Index 25 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGATTCATCGCGTAT33570.10372443966556051TruSeq Adapter, Index 25 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)