FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR16178778

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR16178778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4073944
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length300
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTCACGCAATCTCGTAT45920.11271632599760821TruSeq Adapter, Index 1 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)