FastQCFastQC Report
Tue 12 Sep 2023
stdin:SRR20982505

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47221
Total Bases28.4 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC2024042.862285847398404No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA756916.028885453505858No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA668414.154719298617142No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC38218.0917388450054No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC36137.651256856059804No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA18233.860570508883759No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA15873.360792867580102No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA3470.7348425488659707No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC1600.3388322991889202No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG510.10800279536646831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)