FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982506

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53560
Total Bases32.2 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA4540084.7647498132935No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC23904.462285287528006No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC8491.5851381628080659No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA7451.3909634055265123No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA7241.3517550410754295No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA4790.8943241224794624No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC4640.8663181478715458No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA3720.6945481702763256No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA2410.44996265870052277No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC1640.3061986557132188No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG1030.19230769230769232No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA640.1194921583271098No Hit
CGCATAACTCCTACGGGAGGCATCAGTAGGGAATCTTCCGCAATGGGCGA580.10828976848394323No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGT550.10268857356235997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)