FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982507

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41837
Total Bases25.1 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAACACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC2196652.50376461027321No Hit
GTGAACACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC1182428.262064679589837No Hit
GTGAACACTCCTACGGGAGGCAGCAGTAGGGAATCTTCTACAATGGACGC15253.645098835958601No Hit
GTGAACACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG14673.5064655687549298No Hit
GTGAACACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA8161.950426655830963No Hit
GTGAACACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA7161.7114037813418743No Hit
GTGAACACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA6711.6038434878217847No Hit
GTGAACACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA4100.9799937854052633No Hit
GTGAACACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA2630.628630159906303No Hit
GTGAACACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGA2550.609508329947176No Hit
GTGAACACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGCCGC1880.44936300403948654No Hit
GTGAACACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC1160.2772665344073428No Hit
GTGAACACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG740.17687692712192557No Hit
GTGAACACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA650.1553648684179076No Hit
GTGAACACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA470.11234075100987163No Hit
GTGAACACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA450.10756029352008986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)