FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982508

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48851
Total Bases29.4 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC1929639.49970317905468No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC900118.425416061083705No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA861517.63525823422243No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC48559.938384065832839No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA26175.357106302839246No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA16483.373523571677141No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA7361.5066221776422182No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA5801.1872837812941395No Hit
TCTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA820.16785736218296454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)