FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982509

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49582
Total Bases29.8 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA4566092.0898713242709No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG7801.5731515469323543No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA6651.3412125368077126No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA3410.6877495865435037No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA3130.6312774797305474No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA2910.5869065386632246No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC1250.25210761970069784No Hit
AGCATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC1160.23395587108224758No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC670.13512968415957405No Hit
AGCATGACTCCTACGGGAGGCATCAGTAGGGAATCTTCCGCAATGGGCGA540.10891049171070147No Hit
AGCATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG530.10689363075309588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)