FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982510

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49641
Total Bases29.8 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC1469829.608589673858305No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA957419.286476904171952No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA46079.280634959005662No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC26955.428980076952519No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC23524.738018976249471No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG15613.1445780705465243No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA13492.717511734251929No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG9761.966116718035495No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA9321.8774803086158618No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGC8621.7364678390846278No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA8031.6176144719083014No Hit
CCTATGACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGA6991.4081102314618965No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC6771.3637920267520798No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA6511.3114159666404785No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGAGA5571.1220563646985355No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA4750.9568703289619469No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA4550.9165810519530228No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG4000.8057855401784815No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGG3960.7977276847766966No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA3690.7433371608146492No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA3410.6869321730021555No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGA3040.6123970105356459No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG2220.44721097479905725No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGACGA2100.42303740859370276No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGA1840.3706613484821015No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGA1740.35051670997763945No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGGATATTGGTCAATGGGGGA1540.31022743296871536No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGC1500.3021695775669306No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCTA1140.22964887895086722No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA1040.20950424044640517No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGG920.18533067424105076No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA920.18533067424105076No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA850.17122942728792734No Hit
CCTATGACTCCTACGGGAGGCAGCAGTAGGGAATCTTTCACAATGGGCGA830.1672004995870349No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGG820.16518603573658872No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGT740.14907032493301908No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGA660.13295461412944945No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGGGA660.13295461412944945No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGC630.12691122257811083No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGAGG620.12489675872766463No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGT590.11885336717632601No Hit
CCTATGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGAGGA580.11683890332587982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)