FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982511

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58325
Total Bases35.1 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC1055118.090012858979854No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG619410.619802828975567No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA56039.606515216459494No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC55959.592798971281612No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA47678.173167595370767No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA42957.3639091298756965No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC33975.8242606086583795No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG18233.125589369909987No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA14142.4243463351907417No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGA13522.3180454350621518No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGA11962.050578654093442No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGAGGG11692.0042863266180886No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGA11361.9477068152593227No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA8541.4642091727389628No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA8531.4624946420917273No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA6881.1795970852978999No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG5841.0012858979854264No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGG5100.874410630090013No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTCGGGAATATTGCGCAATGGAGGA4340.7441063009001286No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA4270.7321045863694814No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGAGG3750.6429489927132447No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA3570.6120874410630089No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC3110.5332190312901843No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGGATATTGGTCAATGGGGGA3040.5212173167595371No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA2980.5109301328761252No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGA2650.4543506215173596No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA2400.4114873553364766No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA1810.3103300471495928No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG1670.28632661808829835No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA1610.2760394342048864No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGA1190.20402914702100297No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGGGA1020.17488212601800257No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGC980.1680240034290613No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGC890.15259322760394342No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA800.13716245177882555No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGC750.12858979854264896No Hit
GCAGTTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGT640.10972996142306045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)