FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982512

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39067
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCCACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGA1296333.18145749609645No Hit
AGATCCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC897122.963114649192413No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA33608.600609209819028No Hit
AGATCCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA31358.02467555737579No Hit
AGATCCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC25136.432538971510482No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC20845.334425474185374No Hit
AGATCCACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA15373.9342667724678115No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG5771.4769498553766607No Hit
AGATCCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA5711.461591624644841No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA3670.9394117797629713No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA3200.8191056390303837No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC2820.7218368443955256No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC2310.5912918831750582No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG1660.42491105024701153No Hit
AGATCCACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGAGGG1270.32508255049018353No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGA1240.31740343512427366No Hit
AGATCCACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGT980.250851101953055No Hit
AGATCCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGT920.2354928712212353No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGG820.2098958200015358No Hit
AGATCCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG720.18429876878183635No Hit
AGATCCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC660.16894053805001666No Hit
AGATCCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA560.14334348683031714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)