FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982514

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46137
Total Bases27.7 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCACAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC3468775.18260831870299No Hit
TCCACAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA651714.125322409346078No Hit
TCCACAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA24675.347118364869844No Hit
TCCACAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA4360.9450115958991698No Hit
TCCACAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC2750.59605089190888No Hit
TCCACAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA1230.26659730801742637No Hit
TCCACAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA690.1495545874244099No Hit
TCCACAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG620.13438238290309296No Hit
TCCACAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC610.1322149251143334No Hit
TCCACAACTCCTACGGGAGGCAGCAGTGGGGAATATTTCACAATGGGCGC600.13004746732557382No Hit
TCCACAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC520.11270780501549732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)