FastQCFastQC Report
Tue 12 Sep 2023
stdin:SRR20982515

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50884
Total Bases30.6 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC3236763.60938605455546No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA1072221.071456646490056No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC17203.3802374027199122No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG12942.5430390692555616No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC11152.191258548856222No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC10242.012420407200692No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA3900.766449178523701No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG2870.5640279852212876No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA2690.5286534077509629No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA2180.42842543825170976No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA2110.4146686581243613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)