FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982516

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40095
Total Bases24.1 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA2514262.706073076443445No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA581614.505549320364135No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA33748.415014340940267No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGGATATTGGTCAATGGGGGA16824.19503678762938No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA6801.695972066342437No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGCGA5771.4390821798229205No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC3220.8030926549445069No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC2640.6584362139917695No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG1970.49133308392567654No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC1900.47387454794862205No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA1750.4364633994263624No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG1200.29928918817807704No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA860.21449058486095524No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGGGA850.21199650829280461No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA700.17458535977054496No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA660.1646090534979424No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC470.11722159870308019No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA420.10475121586232697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)