FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982518

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47935
Total Bases28.8 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA2900360.50485031813915No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC933919.482632731824346No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA34297.1534369458641915No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC22174.625013038489621No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG11072.3093772817356837No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGA3400.709293835402107No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC2960.6175028684677167No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA2320.4839887347449672No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG1800.3755085010952331No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA1540.32126838427036614No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC640.13351413372274953No Hit
TGTGTCACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC580.1209971836862418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)