FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982519

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41491
Total Bases24.9 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC2999772.2976067098889No Hit
GTCTGTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC751818.11959220071823No Hit
GTCTGTACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA14703.542937022486804No Hit
GTCTGTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA7951.9160781856306188No Hit
GTCTGTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGCCGC2320.5591574076305705No Hit
GTCTGTACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA1120.2699380588561375No Hit
GTCTGTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG530.1277385457087079No Hit
GTCTGTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA450.10845725579041238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)