FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982520

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57765
Total Bases34.7 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC2224338.50601575348394No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA1531326.509131827231023No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC42417.341815978533714No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA36566.329092010733143No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA20953.626763611183242No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGGGGA19183.3203496927205056No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA10021.7346143858737992No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA9441.634207565134597No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG8191.4178135549207997No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC7961.377997057041461No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGGGGG4780.8274906950575608No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA4530.7842118930148013No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA2270.39297152254825585No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC1970.3410369600969445No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA1680.29083354972734354No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGACGC1580.2735220289102398No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGC1510.2614039643382671No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGC1510.2614039643382671No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA1290.2233186185406388No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC1250.21639401021379726No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGAGGAATATTGCACAATGGGCGC1240.21466285813208688No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGA720.12464294988314722No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG640.11079373322946422No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGCGA600.10386912490262269No Hit
CAGTGTACTCCTACGGGAGGCAGCAGTGAGGGATATTGGTCAATGGGGGA580.10040682073920194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)