FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982522

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45641
Total Bases27.4 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAACGCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA1222626.78731841984181No Hit
TAACGCACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA972821.31416927762319No Hit
TAACGCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC716415.696413312591748No Hit
TAACGCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG539711.824894283648474No Hit
TAACGCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC479710.510286803531912No Hit
TAACGCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC32227.059442168225938No Hit
TAACGCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA5371.1765736947043228No Hit
TAACGCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC4270.9355623233496199No Hit
TAACGCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG4210.9224162485484543No Hit
TAACGCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA1530.3352249074297233No Hit
TAACGCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA1360.29797769549308734No Hit
TAACGCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCTCAATGGGGGA580.1270787230779343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)