FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982523

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57670
Total Bases34.7 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA3083153.46107161435755No Hit
CGAGATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC1368523.72984220565285No Hit
CGAGATACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA38896.743540835789839No Hit
CGAGATACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA31275.4222299289058435No Hit
CGAGATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC16672.89058435928559No Hit
CGAGATACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG14992.5992717183977803No Hit
CGAGATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA4490.7785677128489683No Hit
CGAGATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA3710.6433154152939136No Hit
CGAGATACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC3070.5323391711461766No Hit
CGAGATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC2690.4664470261834576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)