FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982526

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40178
Total Bases24.1 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGAAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA2468861.44656279555976No Hit
ACGAAGACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA614915.304395440290705No Hit
ACGAAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC468911.670565981382847No Hit
ACGAAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA20305.052516302454079No Hit
ACGAAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG5451.3564637363731396No Hit
ACGAAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC4491.117527004828513No Hit
ACGAAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC1820.4529842202200209No Hit
ACGAAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGA1090.27129274727462793No Hit
ACGAAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGA990.246403504405396No Hit
ACGAAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA870.21653641296231768No Hit
ACGAAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC560.13937976006769873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)