FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982527

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44903
Total Bases27 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGCCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC2314651.54666726053938No Hit
TTAGCCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA1199026.702002093401333No Hit
TTAGCCACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA466410.386833841836848No Hit
TTAGCCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC18884.204618845066031No Hit
TTAGCCACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGA10872.4207736676836737No Hit
TTAGCCACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA1930.42981537981872037No Hit
TTAGCCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA1600.35632363093779923No Hit
TTAGCCACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA1480.3295993586174643No Hit
TTAGCCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA790.1759347927755384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)