FastQCFastQC Report
Tue 12 Sep 2023
stdin:SRR20982528

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33098
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA2759583.37361774125324No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA13163.9760710616955706No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC9662.9186053537978123No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA5401.6315185207565412No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC5271.5922412230346246No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA3150.9517191371079824No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC2770.8369085745362258No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA2040.6163514411746933No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGTGA1280.38673031603118013No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGC1040.3142183817753339No Hit
CGAGAAACTCCTACGGGAGGCAGCAGCAGGGAATCTTCCGCAATGGGCGA1030.3111970511813403No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGG640.19336515801559007No Hit
CGAGAAACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGACGA470.14200253791769896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)