FastQCFastQC Report
Tue 12 Sep 2023
stdin:SRR20982529

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40475
Total Bases24.3 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA3558087.90611488573194No Hit
GATACCACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA15843.9135268684373075No Hit
GATACCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA10862.683137739345275No Hit
GATACCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC4571.1290920321185918No Hit
GATACCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA2580.6374305126621371No Hit
GATACCACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGC2020.49907350216182833No Hit
GATACCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA890.2198888202594194No Hit
GATACCACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG490.12106238418777021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)