FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982531

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44716
Total Bases26.9 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA3203671.64325968333483No Hit
ACCTGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC632014.133643438590212No Hit
ACCTGAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA23745.309061633419805No Hit
ACCTGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA17343.8778066016638335No Hit
ACCTGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGC3790.8475713391179892No Hit
ACCTGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC2940.6574827802128992No Hit
ACCTGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA2330.5210662849986581No Hit
ACCTGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA850.19008855890508988No Hit
ACCTGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG610.13641649521424098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)