FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982532

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48623
Total Bases29.2 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA2388849.12901301853033No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA1732135.623059046130436No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC16343.3605495341710716No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGA9912.038130103037657No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA6651.367665508092878No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA6441.3244760709952081No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA4290.8822985007095407No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC3880.797976266375995No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA2420.4977068465540999No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC1790.3681385352610904No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG1660.341402217057771No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGG1400.28792958065113217No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC800.1645311889435041No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG750.1542479896345351No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG500.10283199308969006No Hit
CTTCCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC500.10283199308969006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)