FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982533

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58981
Total Bases35.5 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA3346956.74539258405249No Hit
GGAAGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA1300722.05286448178227No Hit
GGAAGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC53749.11140875875282No Hit
GGAAGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC40036.786931384683204No Hit
GGAAGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA4530.768043946355606No Hit
GGAAGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA3230.5476339838252997No Hit
GGAAGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA2300.389956087553619No Hit
GGAAGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC2240.3797833200522202No Hit
GGAAGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG1470.24923280378426949No Hit
GGAAGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG720.12207321001678506No Hit
GGAAGAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCCCAATGGGGGA700.11868228751631882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)