FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982534

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54536
Total Bases32.8 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA1666130.550462080093883No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC1216022.297198181018043No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC1208422.157840692386678No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG31485.772333871204342No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG28995.315754730820009No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA20863.8249963326976673No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA5681.0415138624028164No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC5541.0158427460759865No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA4250.7793017456359103No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG3600.660114419832771No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA2510.4602464427167376No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA2350.4309080240575033No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA1950.35756197740941764No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA1800.3300572099163855No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTAGGGAATCTTTCACAATGGGCGA1520.27871497726272554No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGC1390.2548775121020977No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGC1340.24570925627108697No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG1170.21453718644565056No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA1080.19803432594983128No Hit
AGAGTAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGC800.14669209329617133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)