FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982535

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49685
Total Bases29.9 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC1643333.07436852168662No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC1105122.242125389956726No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA1066521.465230955016604No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGC20734.172285398007447No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTTCACAATGGGCGA16193.2585287310053337No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA6021.2116332897252693No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC4920.9902385025661669No Hit
CATTCGACTCCTACGGGAGGCAGCAGTCGGGAATATTGCGCAATGGAGGA4040.813122672838885No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA3110.6259434436952802No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG2940.5917278856797826No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA2830.5695884069638724No Hit
CATTCGACTCCTACGGGAGGCAGCAGTTAGGAATATTCGTCAATGGGGGA2800.5635503673140787No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGA2710.5454362483646976No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG2590.5212840897655228No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGG2160.43473885478514646No Hit
CATTCGACTCCTACGGGAGGCAGCAGTCGGGAATATTGCACAATGGAGGA2100.42266277548555903No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC2080.41863741571902985No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA2000.40253597665291335No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA1790.3602696991043574No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA1710.3441682600382409No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGC1700.3421555801549763No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA1610.32404146120559524No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA1380.27774982389051023No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGA1300.2616483848243937No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG1210.24353426587501256No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA1140.22944550669216063No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGGGGG1110.22340746704236691No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGA1090.2193821072758378No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG990.19925530844319214No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGACGA890.17912850961054644No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGAGA880.17711582972728188No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGA810.16302707054442991No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGC770.15497635101137164No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGG760.15296367112810708No Hit
CATTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC680.13686223206199052No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA630.12679883264566771No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGT570.11472275334608031No Hit
CATTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGT560.11271007346281574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)