FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982536

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72054
Total Bases43.3 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA2111029.297471340938742No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGG59618.27296194520776No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC54047.499930607599856No Hit
TAACGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA40895.6749104838038145No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGA39435.472284675382352No Hit
TAACGAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA38535.347378355122547No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC31944.432786521220196No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG31494.370333361090293No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG29384.077497432481195No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA26563.6861242956671383No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGG23083.203153190662559No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA16942.35101451689011No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA15012.083159852332973No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGT11941.6570905154467483No Hit
TAACGAACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGA9591.3309462347683683No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA9461.3129042107308408No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG9101.2629416826269189No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA7851.0894606822660782No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGACGC3790.5259943930940684No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGC3790.5259943930940684No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG3310.4593776889555056No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC2940.4080273128486968No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGT2470.3427984567130208No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGAGGGATATTGGTCAATGGGGGA1610.22344352846476254No Hit
TAACGAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGGGGG1550.2151164404474422No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGA1090.1512754323146529No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGGCAATGGAGGC1090.1512754323146529No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGA920.1276820162655786No Hit
TAACGAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCTT760.10547644821939102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)