FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982537

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40659
Total Bases24.4 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA1726342.458004377874516No Hit
CGGAATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA1481536.43719717651688No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA15713.8638431835509977No Hit
CGGAATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC10892.6783737917804173No Hit
CGGAATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGC8382.061044295235987No Hit
CGGAATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC6551.610959443173713No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGA6401.5740672421850022No Hit
CGGAATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC5081.2494158734843452No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA5011.232199513022947No Hit
CGGAATACTCCTACGGGAGGCAGCAGTAGGGAATCTTTCACAATGGGCGA4311.0600359084089623No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG1460.3590840896234536No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG1350.3320298088983989No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA1210.2975970879756019No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGA1030.2533264467891488No Hit
CGGAATACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA980.24102904645957846No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA890.21889372586635186No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA710.17462308467989868No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC700.1721636046139846No Hit
CGGAATACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA500.1229740032957033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)