FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982538

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48019
Total Bases28.9 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA573211.936941627272537No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGC39478.21966305004269No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG37857.882296590932755No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC36437.58658031195985No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGG35277.3450092671650795No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA32076.678606384972614No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA30556.362065015931194No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA29296.0996688810679105No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA27465.718569732814094No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG17943.7360211582915097No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG12552.6135488035985754No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA10222.1283242050021864No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC9872.0554363897623857No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC9411.9596409754472188No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGAGA7681.5993669172619172No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA7381.5368916470563736No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA7151.4889939398987901No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG6351.3223932193506738No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGT6031.255752931131427No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTTCACAATGGGCGA4010.8350861117474333No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC3150.6559903371582082No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA3130.6518253191445054No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA3070.6393302651033965No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGAGG2820.5872675399321102No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGA2560.5331223057539725No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGA2530.526874778733418No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGG2510.5227097607197151No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCTA2510.5227097607197151No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGA2100.43732689143880543No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC1970.4102542743497366No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGT1660.34569649513734146No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG1290.26864366188383765No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGGGGA810.16868322955496784No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGA810.16868322955496784No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGGGA790.16451821154126492No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGCGA770.160353193527562No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGC760.15827068452071055No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGA740.15410566650700763No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA720.14994064849330474No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGA640.13328057643849311No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGATGA580.12078552239738437No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGC570.11870301339053291No Hit
GTTTCGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGC490.10204294133572128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)