FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982539

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50660
Total Bases30.4 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTAAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA873817.248322147651006No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA48789.628898539281485No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA47779.429530201342281No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA39277.751677852348992No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA29275.777733912356889No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA28945.71259376233715No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC27085.345440189498618No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG25274.988156336360047No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA14742.9095933675483616No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC14532.8681405448085275No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA10162.005527043031978No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGATGA9861.9463087248322148No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG9051.7864192656928544No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTCGGGAATATTGCGCAATGGAGGA7561.4923016186340308No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGT7511.4824318989340703No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGG6901.3620213185945518No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG6341.251480457954994No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGCGA5791.1429135412554283No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG5311.0481642321358073No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGA4920.9711804184761154No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGGGGG4690.9257797078562968No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGGGA3830.7560205290169759No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC3780.7461508093170154No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTGCGCAATGGGCGA3730.7362810896170549No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGA3580.7066719305171734No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGC3460.6829846032372681No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC2820.5566521910777734No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA2220.43821555467824713No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC2180.4303197789182788No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGC2130.4204500592183182No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG1980.39084090011843664No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGA1870.3691275167785235No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGA1870.3691275167785235No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA1760.34741413343861033No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGGCAATGGAGGC1760.34741413343861033No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGACGC1420.28030003947887877No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGGATATTGGTCAATGGGGGA1390.2743782076589025No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTTCACAATGGGCGA1140.2250296091590999No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA1050.20726411369917092No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGGCAATGGGGGC920.18160284247927358No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA850.16778523489932887No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCTT760.15001973943939992No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTAAGGGATATTGGTCAATGGGGGA720.1421239636794315No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA650.1283063560994868No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC640.12633241215949467No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGT550.10856691669956574No Hit
ACCTAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGG510.10067114093959732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)