FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982541

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33311
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA2243267.34111854942812No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA372011.167482213082765No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG17405.223499744829035No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA11073.3232265617964036No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC10033.011017381645703No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA3741.1227522440034823No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG3050.9156134610188826No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG2930.879589324847648No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC1740.5223499744829035No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA1670.5013358950496833No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG1410.42328360001200804No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC1250.37525141845036175No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA1240.37224940710275883No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA1220.36624538440755305No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTCGAGAATCATTCACAATGGGGGA1030.30920716880309806No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGCGA560.16811263546576205No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA520.1561045900753505No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA520.1561045900753505No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC470.14109453333733601No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA470.14109453333733601No Hit
GTTGAAATTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA400.12008045390411576No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGGCGA360.10807240851370419No Hit
GTTGAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA340.10206838581849839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)