FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982542

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37168
Total Bases22.3 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA1988253.49225139905295No Hit
CGTACGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA1070428.79896685320706No Hit
CGTACGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG12973.4895609126130003No Hit
CGTACGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA11102.9864399483426602No Hit
CGTACGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGG8422.2653895824365047No Hit
CGTACGACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA6011.616982350408954No Hit
CGTACGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC5611.5093628928110203No Hit
CGTACGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC5001.3452432199741713No Hit
CGTACGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGA2870.7721696082651743No Hit
CGTACGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC2560.6887645286267757No Hit
CGTACGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGA400.1076194575979337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)