FastQCFastQC Report
Tue 12 Sep 2023
stdin:SRR20982544

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45284
Total Bases27.2 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC1060623.421075876689336No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC978121.59924034979242No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA758316.745428849041605No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA34997.726790919530077No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA29036.41065276919No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA21474.74118894090628No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC20114.440862114654182No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA8841.9521243706386364No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC7691.6981715396166417No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGC5861.2940552954685982No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGA4340.9583959014221358No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG4260.9407296175249537No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA2990.6602773606571858No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA2960.6536525041957424No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGC2620.578570797632718No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATCTTTCACAATGGGCGA2480.5476548008126491No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGGGGG2270.5012808055825457No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG2190.4836145216853635No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA1320.29149368430350675No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGGGGA1050.23186997615051674No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGG760.16782969702323117No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGGGA730.16120484056178783No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGA540.11924741630598004No Hit
TGTGCAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGAGGA540.11924741630598004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)