FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982545

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69731
Total Bases41.9 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC2111030.273479514132884No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA854712.257102293097761No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC793911.38518019245386No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC65429.381767076336207No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA64419.236924753696348No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGC34905.004947584288193No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATCTTTCACAATGGGCGA30934.435616870545381No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA22023.1578494500293983No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGG12451.7854325909566764No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA11661.6721400811690639No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGA9141.310751315770604No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGAGA6540.9378898911531456No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA5700.8174269693536591No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA4980.7141730363826706No Hit
CGCATAACTCCTACGGGAGGCAGCAGTCGGGAATATTGCACAATGGAGGA3560.5105333352454432No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGCGA3180.4560382039551993No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG2650.3800318366293327No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGA2160.3097617989129655No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA1940.27821198606071906No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGC1800.25813483242747126No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA1800.25813483242747126No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGGGGG1580.2265850195752248No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGA1380.197903371527728No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGC1330.19073295951585378No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG1320.18929887711347895No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC1320.18929887711347895No Hit
CGCATAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGGGGA1230.1763921354921054No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA1000.14340824023748405No Hit
CGCATAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG880.12619925140898597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)