FastQCFastQC Report
Wed 13 Sep 2023
stdin:SRR20982546

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20982546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39282
Total Bases23.6 Mbp
Sequences flagged as poor quality0
Sequence length602
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGC913823.262563005956927No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGA897022.834886207423246No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGGCGC870422.15773127641159No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGA13983.5588819306552617No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGC13823.518150806985388No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATCTTTCACAATGGGCGA9352.380225039458276No Hit
GCACAAACTCCTACGGGAGGCAGCAGTCGGGAATATTGCGCAATGGAGGA6291.601242299271931No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGG5601.4255893284455985No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGG4661.1862939768850873No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGC4561.160837024591416No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGACGA4331.1022860343159717No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGG4161.0590092154167303No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGG3910.9953668346825518No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGAGA3270.8324423400030547No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGC2920.743343006975205No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGGGGGA2870.7306145308283692No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGA2680.6822463214703935No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGCACAATGGGGGA2630.6695178453235578No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGA2370.6033297693600123No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGG2370.6033297693600123No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGA2290.5829642075250752No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGG2230.5676900361488723No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATTTTGCGCAATGCTCGA1920.48877348403849086No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGGATATTGGACAATGGGGGA1920.48877348403849086No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGA1830.4658622269741866No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCTT1460.3716715034876025No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCGCAATGGGGGC1400.3563973321113996No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGC1250.3182119036708925No Hit
GCACAAACTCCTACGGGAGGCAGCAGTTAGGAATATTCGTCAATGGGGGA1190.3029377322946897No Hit
GCACAAACTCCTACGGGAGGCAGCAGTCGGGAATATTGCACAATGGAGGA900.2291125706430426No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGA780.19856422789063694No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGT710.18074436128506693No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGA680.17310727559696554No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGAGG670.1705615803675984No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATATTGCTCAATGGGGGA510.12983045669772417No Hit
GCACAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGTCAATGGGGGG430.10946489486278702No Hit
GCACAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGAGGC430.10946489486278702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)